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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" article-type="research-article" dtd-version="1.2" xml:lang="en"><front><journal-meta><journal-id journal-id-type="publisher-id">Almanac of Clinical Medicine</journal-id><journal-title-group><journal-title xml:lang="en">Almanac of Clinical Medicine</journal-title><trans-title-group xml:lang="ru"><trans-title>Альманах клинической медицины</trans-title></trans-title-group></journal-title-group><issn publication-format="print">2072-0505</issn><issn publication-format="electronic">2587-9294</issn><publisher><publisher-name xml:lang="en">Moscow Regional Research and Clinical Institute (MONIKI)</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="publisher-id">17246</article-id><article-id pub-id-type="doi">10.18786/2072-0505-2024-52-021</article-id><article-categories><subj-group subj-group-type="toc-heading" xml:lang="en"><subject>ARTICLES</subject></subj-group><subj-group subj-group-type="toc-heading" xml:lang="ru"><subject>ОРИГИНАЛЬНЫЕ СТАТЬИ</subject></subj-group><subj-group subj-group-type="article-type"><subject>Research Article</subject></subj-group></article-categories><title-group><article-title xml:lang="en">The group of hypermethylated long noncoding RNA genes is associated with different types of metastasis in ovarian cancer</article-title><trans-title-group xml:lang="ru"><trans-title>Группа гиперметилированных генов длинных некодирующих РНК ассоциирована с разными типами метастазирования рака яичников</trans-title></trans-title-group></title-group><contrib-group><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-9398-8075</contrib-id><name-alternatives><name xml:lang="en"><surname>Burdenny</surname><given-names>Alexey M.</given-names></name><name xml:lang="ru"><surname>Бурдённый</surname><given-names>Алексей Михайлович</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>Cand. of Biol. Sci., Leading Research Fellow, Laboratory of Pathogenomics and Transcriptomics; Junior Research Fellow, Laboratory of Chemical Physics of Bioanalytical Processes</p></bio><bio xml:lang="ru"><p>канд. биол. наук, вед. науч. сотр. лаборатории патогеномики и транскриптомики; мл. науч. сотр. лаборатории химической физики биоаналитических процессов</p></bio><email>burdennyy@gmail.com</email><xref ref-type="aff" rid="aff1"/><xref ref-type="aff" rid="aff2"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-6246-2444</contrib-id><name-alternatives><name xml:lang="en"><surname>Lukina</surname><given-names>Svetlana S.</given-names></name><name xml:lang="ru"><surname>Лукина</surname><given-names>Светлана Сергеевна</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>Research Fellow, Laboratory of Pathogenomics and Transcriptomics</p></bio><bio xml:lang="ru"><p>науч. сотр. лаборатории патогеномики и транскриптомики</p></bio><email>sveta_sergeevna349@mail.ru</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-7172-0433</contrib-id><name-alternatives><name xml:lang="en"><surname>Filippova</surname><given-names>Elena A.</given-names></name><name xml:lang="ru"><surname>Филиппова</surname><given-names>Елена Александровна</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>PhD, Research Fellow, Laboratory of Pathogenomics and Transcriptomics</p></bio><bio xml:lang="ru"><p>канд. мед. наук, науч. сотр. лаборатории патогеномики и транскриптомики</p></bio><email>p.lenyxa@yandex.ru</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-3314-6183</contrib-id><name-alternatives><name xml:lang="en"><surname>Ivanova</surname><given-names>Natalya A.</given-names></name><name xml:lang="ru"><surname>Иванова</surname><given-names>Наталья Анатольевна</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>Junior Research Fellow, Laboratory of Pathogenomics and Transcriptomics</p></bio><bio xml:lang="ru"><p>мл. науч. сотр. лаборатории патогеномики и транскриптомики</p></bio><email>nata-i@list.ru</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-0423-7801</contrib-id><name-alternatives><name xml:lang="en"><surname>Pronina</surname><given-names>Irina V.</given-names></name><name xml:lang="ru"><surname>Пронина</surname><given-names>Ирина Валерьевна</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>Cand. of Biol. Sci., Senior Research Fellow, Laboratory of Pathogenomics and Transcriptomics</p></bio><bio xml:lang="ru"><p>канд. биол. наук, ст. науч. сотр. лаборатории патогеномики и транскриптомики</p></bio><email>zolly_sten@mail.ru</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-2668-8096</contrib-id><name-alternatives><name xml:lang="en"><surname>Loginov</surname><given-names>Vitaly I.</given-names></name><name xml:lang="ru"><surname>Логинов</surname><given-names>Виталий Игоревич</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>Cand. of Biol. Sci., Leading Research Fellow, Laboratory of Pathogenomics and Transcriptomics; Senior Research Fellow</p></bio><bio xml:lang="ru"><p>канд. биол. наук, вед. науч. сотр. лаборатории патогеномики и транскриптомики; ст. науч. сотр.</p></bio><email>loginov7w@gmail.com</email><xref ref-type="aff" rid="aff1"/><xref ref-type="aff" rid="aff3"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-5856-0017</contrib-id><name-alternatives><name xml:lang="en"><surname>Kazubskaya</surname><given-names>Tatyana P.</given-names></name><name xml:lang="ru"><surname>Казубская</surname><given-names>Татьяна Павловна</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>MD, PhD, Oncogeneticist, Senior Research Fellow, Laboratory of Clinical Oncogenetics</p></bio><bio xml:lang="ru"><p>д-р мед. наук, врач-онкогенетик высшей категории, ст. науч. сотр. лаборатории клинической онкогенетики</p></bio><email>oncogen5@ronc.ru</email><xref ref-type="aff" rid="aff4"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-1490-8418</contrib-id><name-alternatives><name xml:lang="en"><surname>Kushlinsky</surname><given-names>Dmitry N.</given-names></name><name xml:lang="ru"><surname>Кушлинский</surname><given-names>Дмитрий Николаевич</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>PhD, Associate Professor, Chair of Oncology and Pathomorphological Disciplines; Head of the Department of Gynecological Oncology</p></bio><bio xml:lang="ru"><p>канд. мед. наук, доцент кафедры онкологии и патоморфологических дисциплин; заведующий отделением онкогинекологии</p></bio><email>drkushlinskiy@gmail.com</email><xref ref-type="aff" rid="aff5"/><xref ref-type="aff" rid="aff6"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0009-0007-1561-9681</contrib-id><name-alternatives><name xml:lang="en"><surname>Tsekatunov</surname><given-names>Dmitry A.</given-names></name><name xml:lang="ru"><surname>Цекатунов</surname><given-names>Дмитрий Анатольевич</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>MD, Pathologist, Head of the Department of Pathological Anatomy</p></bio><bio xml:lang="ru"><p>врач-патологоанатом, заведующий отделением патологической анатомии</p></bio><email>mtsekatunov@inbox.ru</email><xref ref-type="aff" rid="aff6"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-1380-3710</contrib-id><name-alternatives><name xml:lang="en"><surname>Zhordania</surname><given-names>Kirill I.</given-names></name><name xml:lang="ru"><surname>Жорданиа</surname><given-names>Кирилл Иосифович</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>MD, PhD, Professor, Leading Research Fellow, Department of Gynecological Oncology</p></bio><bio xml:lang="ru"><p>д-р мед. наук, профессор, ведущий научный сотрудник отделения онкогинекологии</p></bio><email>kiazo2@yandex.ru</email><xref ref-type="aff" rid="aff4"/></contrib><contrib contrib-type="author"><contrib-id contrib-id-type="orcid">https://orcid.org/0000-0001-5188-4094</contrib-id><name-alternatives><name xml:lang="en"><surname>Braga</surname><given-names>Eleonora A.</given-names></name><name xml:lang="ru"><surname>Брага</surname><given-names>Элеонора Александровна</given-names></name></name-alternatives><address><country country="RU">Russian Federation</country></address><bio xml:lang="en"><p>Doctor of Biol. Sci., Professor, Head of Laboratory of Pathogenomics and Transcriptomics; Leading Research Fellow</p></bio><bio xml:lang="ru"><p>д-р биол. наук, профессор, заведующая лабораторией патогеномики и транскриптомики; вед. науч. сотр.</p></bio><email>eleonora10_45@mail.ru</email><xref ref-type="aff" rid="aff1"/><xref ref-type="aff" rid="aff3"/></contrib></contrib-group><aff-alternatives id="aff1"><aff><institution xml:lang="en">Institute of General Pathology and Pathophysiology</institution></aff><aff><institution xml:lang="ru">ФГБНУ «Научно-исследовательский институт общей патологии и патофизиологии»</institution></aff></aff-alternatives><aff-alternatives id="aff2"><aff><institution xml:lang="en">N.M. Emanuel Institute for Biochemical Physics</institution></aff><aff><institution xml:lang="ru">ФГБУН Институт биохимической физики им. Н.М. Эмануэля Российской академии наук</institution></aff></aff-alternatives><aff-alternatives id="aff3"><aff><institution xml:lang="en">Research Centre for Medical Genetics</institution></aff><aff><institution xml:lang="ru">ФГБНУ «Медико-генетический научный центр им. академика Н.П. Бочкова»</institution></aff></aff-alternatives><aff-alternatives id="aff4"><aff><institution xml:lang="en">N.N. Blokhin National Medical Research Center of Oncology</institution></aff><aff><institution xml:lang="ru">ФГБУ «Национальный медицинский исследовательский центр онкологии им. Н.Н. Блохина» Минздрава России</institution></aff></aff-alternatives><aff-alternatives id="aff5"><aff><institution xml:lang="en">Institute for Advanced Training of Healthcare Specialists Ministry of Health of the Khabarovsk Territory</institution></aff><aff><institution xml:lang="ru">КГБОУ ДПО «Институт повышения квалификации специалистов здравоохранения» Минздрава Хабаровского края</institution></aff></aff-alternatives><aff-alternatives id="aff6"><aff><institution xml:lang="en">Regional Clinical Center of Oncology Ministry of Health of the Khabarovsk Territory</institution></aff><aff><institution xml:lang="ru">КГБУЗ «Краевой клинический центр онкологии» Минздрава Хабаровского края</institution></aff></aff-alternatives><pub-date date-type="pub" iso-8601-date="2024-09-10" publication-format="electronic"><day>10</day><month>09</month><year>2024</year></pub-date><volume>52</volume><issue>3</issue><issue-title xml:lang="en"/><issue-title xml:lang="ru"/><fpage>149</fpage><lpage>161</lpage><history><date date-type="received" iso-8601-date="2024-03-25"><day>25</day><month>03</month><year>2024</year></date><date date-type="accepted" iso-8601-date="2024-08-22"><day>22</day><month>08</month><year>2024</year></date></history><permissions><copyright-statement xml:lang="en">Copyright ©; 2024, Burdenny A.M., Lukina S.S., Filippova E.A., Ivanova N.A., Pronina I.V., Loginov V.I., Kazubskaya T.P., Kushlinsky D.N., Tsekatunov D.A., Zhordania K.I., Braga E.A.</copyright-statement><copyright-statement xml:lang="ru">Copyright ©; 2024, Бурдённый А.М., Лукина С.С., Филиппова Е.А., Иванова Н.А., Пронина И.В., Логинов В.И., Казубская Т.П., Кушлинский Д.Н., Цекатунов Д.А., Жорданиа К.И., Брага Э.А.</copyright-statement><copyright-year>2024</copyright-year><copyright-holder xml:lang="en">Burdenny A.M., Lukina S.S., Filippova E.A., Ivanova N.A., Pronina I.V., Loginov V.I., Kazubskaya T.P., Kushlinsky D.N., Tsekatunov D.A., Zhordania K.I., Braga E.A.</copyright-holder><copyright-holder xml:lang="ru">Бурдённый А.М., Лукина С.С., Филиппова Е.А., Иванова Н.А., Пронина И.В., Логинов В.И., Казубская Т.П., Кушлинский Д.Н., Цекатунов Д.А., Жорданиа К.И., Брага Э.А.</copyright-holder><ali:free_to_read xmlns:ali="http://www.niso.org/schemas/ali/1.0/"/><license><ali:license_ref xmlns:ali="http://www.niso.org/schemas/ali/1.0/">https://creativecommons.org/licenses/by-nc/4.0</ali:license_ref></license></permissions><self-uri xlink:href="https://almclinmed.ru/jour/article/view/17246">https://almclinmed.ru/jour/article/view/17246</self-uri><abstract xml:lang="en"><p><bold>Background:</bold> Ovarian tumors are characterized by asymptomatic progression until their late stages, when at the time of diagnosis the patient already has extensive metastatic disease. In addition to lymphogenous and hematogenous metastasis in ovarian cancer, there are peritoneal dissemination and metastasis to the greater omentum with ascites; moreover, peritoneal carcinomatosis is the predominant route of metastasizing of ovarian cancer. Epigenetic factors, such as gene methylation, regulatory microRNAs and long non-coding RNAs (lncRNAs), contribute to progression of this cancer. Our previous bioinformatic and experimental studies have identified 13 genes of lncRNAs (<italic>GAS5, HOTAIR, LINC00472, LINC00886, MAFG-DT, PLUT/PDX1-AS1, SNHG1, SNHG6, SNHG12, SNHG17, TINCR, TP53TG1, TUG1</italic>) hypermethylated in the ovarian neoplasms.</p> <p><bold>Aim:</bold> To evaluate the clinical significance of methylation levels of 13 lncRNA genes (<italic>GAS5, HOTAIR, LINC00472, LINC00886, MAFG-DT, PLUT/PDX1-AS1, SNHG1, SNHG6, SNHG12, SNHG17, TINCR, TP53TG1, TUG1</italic>) associated with various types of ovarian cancer metastasis, including lymphogenous, peritoneal, omental, and distant metastases.</p> <p><bold>Methods:</bold> The methylation levels of lncRNA genes <italic>GAS5, HOTAIR, LINC00472, LINC00886, MAFG-DT, PLUT/PDX1-AS1, SNHG1, SNHG6, SNHG12, SNHG17, TINCR, TP53TG1, TUG1</italic> were analyzed by quantitative real-time methylation-specific polymerase chain reaction. We tested 122 duplicate samples of ovarian neoplasms, including 104 malignancies and 18 borderline tumors, as well as 45 peritoneal macro metastases, collected in the N.N. Blokhin National Medical Research Center of Oncology in 2020 to 2023. The study included 21 samples of primary tumor from patients with lymphogenous metastases, 45 samples from patients with peritoneal dissemination, 61 from those with omental metastases, 49 from patients with ascites, and 9 with distant metastases.</p> <p><bold>Results:</bold> The tumor samples from the patients with lymphatic nodes metastases showed a significant increase in the methylation level of two lncRNA genes: <italic>SNHG6</italic> (p = 0.044) and <italic>SNHG12</italic> (p = 0.006). Peritoneal dissemination was associated with hypermethylation of four lncRNA genes: <italic>GAS5, HOTAIR, LINC00472</italic> (p &lt; 0.05), and most significantly <italic>TINCR</italic> (p = 0.001). <italic>GAS5, HOTAIR, LINC00886</italic> (p &lt; 0.05) and most significantly <italic>LINC00472</italic> (p &lt; 0.001) hypermethylation was typical for omental metastasis, and that of <italic>LINC00472</italic> and <italic>LINC00886</italic>, with ascites (p &lt; 0.05). Peritoneal macroscopic metastases demonstrated increased methylation of <italic>MAFG-DT </italic>(p &lt; 0.001) and <italic>TP53TG1</italic> (p &lt; 0.001) and desmethylation of <italic>LINC00886</italic> (p = 0.003) and <italic>SNHG12</italic> (p = 0.002), compared to their primary tumors.</p> <p><bold>Conclusion:</bold> We performed the analysis of clinical significance of 13 hypermethylated lncRNA genes in ovarian cancer and were the first to show that 10 genes (<italic>GAS5, HOTAIR, LINC00472, LINC00886, MAFG-DT, SNHG6, SNHG12, TINCR, TP53TG1, TUG1</italic>) were associated with various types of ovarian tumor metastasis. Also, we were able to determine certain panels of lncRNA, which, if demonstrate abnormal methylation, were specific for lymphogenous and peritoneal metastasis of ovarian tumors.</p></abstract><trans-abstract xml:lang="ru"><p><bold>Обоснование.</bold> Опухоли яичников характеризуются бессимптомным течением вплоть до поздних стадий, когда на момент установления диагноза у пациентки уже имеется обширное метастазирование. Помимо лимфогенного и гематогенного метастазирования при раке яичников наблюдаются диссеминация по брюшине, метастазирование в большой сальник и образование асцита; при этом канцероматоз брюшины – преимущественный путь метастазирования рака яичников. В процессах прогрессирования новообразования участвуют эпигенетические факторы: метилирование генов, регуляторные микроРНК и длинные некодирующие РНК (днРНК). В наших предыдущих исследованиях сначала биоинформатически, а затем и экспериментально были идентифицированы 13 генов днРНК (<italic>GAS5, HOTAIR, LINC00472, LINC00886, MAFG-DT, PLUT/PDX1-AS1, SNHG1, SNHG6, SNHG12, SNHG17, TINCR, TP53TG1, TUG1</italic>), гиперметилированных в опухолях яичников.</p> <p><bold>Цель</bold> – оценить клиническую значимость уровней метилирования 13 генов днРНК (<italic>GAS5, HOTAIR, LINC00472, LINC00886, MAFG-DT, PLUT/PDX1-AS1, SNHG1, SNHG6, SNHG12, SNHG17, TINCR, TP53TG1, TUG1</italic>), ассоциированных с разными типами метастазирования рака яичников, включая лимфогенное, по брюшине, в большой сальник и отдаленные органы.</p> <p><bold>Материал и методы.</bold> Уровень метилирования генов днРНК <italic>GAS5, HOTAIR, LINC00472, LINC00886, MAFG-DT, PLUT/PDX1-AS1, SNHG1, SNHG6, SNHG12, SNHG17, TINCR, TP53TG1, TUG1</italic> анализировали с применением количественной метил- специфичной полимеразной цепной реакции в реальном времени. Исследованы 122 парных образца опухолей яичников, включая 104 злокачественные опухоли и 18 пограничных, а также 45 макроскопических перитонеальных метастазов, собранных в ФГБУ «НМИЦ онкологии им. Н.Н. Блохина» Минздрава России в период с 2020 по 2023 г. Исследование включало 21 образец первичной опухоли больных с лимфогенными метастазами, 45 – с диссеминатами по брюшине, 61 – с метастазами в большом сальнике, 49 – с наличием асцита и 9 – с отдаленными метастазами.</p> <p><bold>Результаты.</bold> При анализе образцов опухолей больных с метастазами в лимфатических узлах показано статистически значимое повышение уровня метилирования 2 генов днРНК: <italic>SNHG6</italic> (р = 0,044) и <italic>SNHG12</italic> (р = 0,006). С диссеминацией по брюшине ассоциировано гиперметилирование 4 генов днРНК: <italic>GAS5, HOTAIR, LINC00472</italic> (р &lt; 0,05) и наиболее значимо <italic>TINCR</italic> (р = 0,001). С метастазированием в большой сальник ассоциированы <italic>GAS5, HOTAIR, LINC00886</italic> (р &lt; 0,05) и наиболее значимо <italic>LINC00472</italic> (р &lt; 0,001); с наличием асцита – <italic>LINC00472</italic> и <italic>LINC00886</italic> (р &lt; 0,05). В перитонеальных макроскопических метастазах относительно парных первичных опухолей отмечено повышение метилирования <italic>MAFG-DT</italic> (р &lt; 0,001) и <italic>TP53TG1</italic> (р &lt; 0,001) и деметилирование <italic>LINC00886</italic> (р = 0,003) и <italic>SNHG12</italic> (р = 0,002).</p> <p><bold>Заключение.</bold> Проведен анализ клинической значимости 13 гиперметилированных генов днРНК при раке яичников. Впервые установлено, что 10 генов (<italic>GAS5, HOTAIR, LINC00472, LINC00886, MAFG-DT, SNHG6, SNHG12, TINCR, TP53TG1, TUG1</italic>) ассоциированы с различными типами метастазирования опухолей данного типа. Выявлены определенные панели днРНК, изменение метилирования которых характерно для лимфогенного и перитонеального метастазирования опухолей яичников.</p></trans-abstract><kwd-group xml:lang="en"><kwd>ovarian cancer</kwd><kwd>peritoneal metastasis</kwd><kwd>omentum</kwd><kwd>ascites</kwd><kwd>non-coding RNA</kwd><kwd>regulatory factor</kwd></kwd-group><kwd-group xml:lang="ru"><kwd>рак яичников</kwd><kwd>перитонеальное метастазирование</kwd><kwd>большой сальник</kwd><kwd>асцит</kwd><kwd>некодирующая РНК</kwd><kwd>регуляторный фактор</kwd></kwd-group><funding-group><award-group><funding-source><institution-wrap><institution xml:lang="ru">Российский научный фонд</institution></institution-wrap><institution-wrap><institution xml:lang="en">Russian Science Foundation</institution></institution-wrap></funding-source><award-id>20-15-00368-П</award-id></award-group></funding-group></article-meta></front><body></body><back><ref-list><ref id="B1"><label>1.</label><citation-alternatives><mixed-citation xml:lang="en">Kaprin AD, Starinsky VV, Shakhzadova AO, Lisichnikova IV, editors. 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